BioRay: Real-Time Ray Tracing and Volume Rendering in Bioinformatics
Images rendered interactively using our system: molecular viewer BALLView powered by real-time ray tracing library RTfact
About
In this project we research the applications of real-time ray tracing and volume rendering in the bioinformatics domain. We are working on the visualization of proteins (cartoon models, surfaces), their properties (electrostatic potential) and related organisms (viral cryo-EM maps). Besides visualization itself, we also aim at applying ray tracing to non-visualization tasks where ray tracing serves as a general sampling algorithm.
Our primary platform is the molecular viewer and modeling tool BALLView coupled with real-time ray tracing library RTfact. On one side we use a set of advanced techniques on the CPU, like packet and frustum tracing, building from hierarchies, vectorization, and generic programming to achieve interactivity even on large (multi-million) and dynamic polygonal scenes. On the other hand, we employ advanced GPU-based volume ray tracer to deal with non-polygonal volumetric and procedural datasets in real-time.
People
- Lukas Marsalek
- Andreas Hildebrandt
- Anne Dehof
- Stefan Nickels
- Iliyan Georgiev
- Daniel Stöckel
Contact
Lukas Marsalek
Email: marsalek at cs dot uni-saarland dot de
Tel: +49 681 302 3836
URL: http://graphics.cs.uni-saarland.de/marsalek/
BioRay in Action!
Do you want to see BioRay in action? Check out our latest video!
Jobs & Theses
Thank you for you interest. Currently, our capacities are filled. Still, if you are interested in HiWi position or have an interesting related idea for Master or Bachelor thesis, don't be shy and contact us at marsalek at cs dot uni-saarland dot de
Publications
Want to know more? Check the links at the titles of the publications! They will lead you to images & pdfs!
Contributions to proceedings: | |
|---|---|
| 6. |
Real-Time Ray Tracing of Complex Molecular Scenes
14th International Conference on Information Visualisation (IV)
, page 239--245.
London
July
2010
DOI: 10.1109/IV.2010.43
ISBN: 978-1-4244-7846-0
|
| 5. |
Measuring Properties of Molecular Surfaces Using Ray Casting
Proceedings of 9th International Workshop on High Performance Computational Biology
, page 1--7.
April
2010
ISBN: 978-1-4244-6533-0
|
Posters: | |
| 4. |
Real-Time Ray Tracing and Volume Rendering in Molecular Visualization
EMBO Workshop on Visualizing Biological Data (VizBi)
2010
Note: Best Poster Award Nominee |
| 3. |
Interactive Real-Time Ray Tracing in Molecular Visualization
Poster, German Conference on Bioinformatics (GCB)
2009
Note: Best Poster Award Winner |
| 2. |
Real-time ray tracing of complex molecular scenes with BALLView and RTfact
Poster, ISBM/ECCB Stockholm
2009
|
| 1. |
Real-Time Volume Ray Tracing For Bioinformatics Applications
Poster, ISBM/ECCB Stockholm
2009
|




